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1

Identification of a new human coronavirus

van der Hoek, Lia, Pyrc, Krzysztof, Jebbink, Maarten F, Vermeulen-Oost, Wilma, Berkhout, Ron J M, Wolthers, Katja C, Wertheim-van Dillen, Pauline M E, Kaandorp, Jos, Spaargaren, Joke, Berkhout, Ben

Journal:

Nature Medicine

Year:

2004

Language:

english

File:

PDF, 642 KB

english, 2004

2

A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium

Elien Moës, Leen Vijgen, Els Keyaerts, Kalina Zlateva, Sandra Li, Piet Maes, Krzysztof Pyrc, Ben Berkhout, Lia van der Hoek, Marc Van Ranst

Journal:

BMC Infectious Diseases

Year:

2005

Language:

english

File:

PDF, 1.08 MB

english, 2005

3

The interplay between virus infection and the cellular RNA interference machinery

Ben Berkhout, Joost Haasnoot

Journal:

Year:

2006

Language:

english

File:

PDF, 138 KB

english, 2006

4

2008 Nobel prize in Medicine for discoverers of HIV

Andrew ML Lever, Ben Berkhout

Journal:

Year:

2008

Language:

english

File:

PDF, 98 KB

english, 2008

5

HIV resistance to dolutegravir: are we looking at the wrong place?

Darcis, Gilles, Berkhout, Ben

Journal:

The Journal of Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 264 KB

english, 2018

6

Lentiviral vectors that carry anti-HIV shRNAs: problems and solutions

Olivier ter Brake, Ben Berkhout

Journal:

The Journal of Gene Medicine

Year:

2007

Language:

english

File:

PDF, 290 KB

english, 2007

7

Stringent testing identifies highly potent and escape-proof anti-HIV short hairpin RNAs

Karin J. von Eije, Olivier ter Brake, Ben Berkhout

Journal:

The Journal of Gene Medicine

Year:

2009

Language:

english

File:

PDF, 203 KB

english, 2009

8

Rise in seroprevalence of herpes simplex virus type 1 among highly sexual active homosexual men and an increasing association between herpes simplex virus type 2 and HIV over time (1984–2003)

Colette Smit, Christiaan Pfrommer, Adrian Mindel, Janette Taylor, Joke Spaargaren, Ben Berkhout, Roel Coutinho, Nicole H. T. M. Dukers

Journal:

European Journal of Epidemiology

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

9

Towards an HIV cure: a global scientific strategy

Deeks, Steven G., Autran, Brigitte, Berkhout, Ben, Benkirane, Monsef, Cairns, Scott, Chomont, Nicolas, Chun, Tae-Wook, Churchill, Melissa, Mascio, Michele Di, Katlama, Christine, Lafeuillade, Alain, L

Journal:

Nature Reviews Immunology

Year:

2012

Language:

english

File:

PDF, 436 KB

english, 2012

10

Aspirin-like molecules that inhibit human immunodeficiency virus 1 replication

Cândida F. Pereira, Judith T.M.L. Paridaen, Karla Rutten, Marleen C.D.G. Huigen, Marja van de Bovenkamp, Jeena Middel, Nancy Beerens, Ben Berkhout, Rob Schuurman, Lawrence J. Marnett, Jan Verhoef, Han

Journal:

Antiviral Research

Year:

2003

Language:

english

File:

PDF, 288 KB

english, 2003

11

Human immunodeficiency virus uses tRNALys,3 as primer for reverse transcription in HeLa-CD4+ cells

Atze T. Das, Sabine E.C. Koken, Belinda B. Oude Essink, Jeroen L.B. van Wamel, Ben Berkhout

Journal:

Year:

1994

Language:

english

File:

PDF, 537 KB

english, 1994

12

HIV, leukemia, and new horizons in molecular therapy

Journal:

Journal of the Formosan Medical Association

Year:

2013

Language:

english

File:

PDF, 245 KB

english, 2013

13

[Advances in Experimental Medicine and Biology] Gene Therapy for HIV and Chronic Infections Volume 848 || Recent Advances in Use of Gene Therapy to Treat Hepatitis B Virus Infection

Berkhout, Ben, Ertl, Hildegund C.J., Weinberg, Marc S.

Year:

2015

Language:

english

File:

PDF, 450 KB

english, 2015

14

Delineation of the Exact Transcription Termination Signal for Type 3 Polymerase III

Gao, Zongliang, Herrera-Carrillo, Elena, Berkhout, Ben

Journal:

Molecular Therapy — Nucleic Acids

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

15

Antibacterial and Antiviral Effects of Milk Proteins and Derivatives Thereof

Floris, Rene, Recio, Isidra, Berkhout, Ben, Visser, Servaas

Journal:

Current Pharmaceutical Design

Year:

2003

Language:

english

File:

PDF, 104 KB

english, 2003

16

Bone Marrow Gene Therapy for HIV/AIDS

Herrera-Carrillo, Elena, Berkhout, Ben

Journal:

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

17

Jan van der Noordaa (1934–2015); A Virologist Pur Sang

Berkhout, Ben, Bukrinsky, Michael

Journal:

Year:

2015

Language:

english

File:

PDF, 420 KB

english, 2015

18

The Battle of RNA Synthesis: Virus versus Host

Harwig, Alex, Landick, Robert, Berkhout, Ben

Journal:

Year:

2017

Language:

english

File:

PDF, 969 KB

english, 2017

19

Tackling HIV Persistence: Pharmacological versus CRISPR-Based Shock Strategies

Darcis, Gilles, Das, Atze, Berkhout, Ben

Journal:

Year:

2018

Language:

english

File:

PDF, 3.11 MB

english, 2018

20

A Phylogenetic Survey on the Structure of the HIV-1 Leader RNA Domain That Encodes the Splice Donor Signal

Mueller, Nancy, Das, Atze, Berkhout, Ben

Journal:

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

21

CRISPR therapy towards an HIV cure

Herrera-Carrillo, Elena, Gao, Zongliang, Berkhout, Ben

Journal:

Briefings in Functional Genomics

Year:

2019

Language:

english

File:

PDF, 35.20 MB

english, 2019

22

CRISPR therapy towards an HIV cure

Herrera-Carrillo, Elena, Gao, Zongliang, Berkhout, Ben

Journal:

Briefings in Functional Genomics

Year:

2019

File:

PDF, 35.20 MB

2019

23

CD32+CD4+ T Cells Are Highly Enriched for HIV DNA and Can Support Transcriptional Latency

Darcis, Gilles, Kootstra, Neeltje A., Hooibrink, Berend, van Montfort, Thijs, Maurer, Irma, Groen, Kevin, Jurriaans, Suzanne, Bakker, Margreet, van Lint, Carine, Berkhout, Ben, Pasternak, Alexander O.

Journal:

Year:

2020

Language:

english

File:

PDF, 2.39 MB

english, 2020

24

Improved single-chain transactivators of the Tet-On gene expression system

Xue Zhou, Jori Symons, Rieuwert Hoppes, Christel Krueger, Christian Berens, Wolfgang Hillen, Ben Berkhout, Atze T Das

Journal:

BMC Biotechnology

Year:

2007

Language:

english

File:

PDF, 595 KB

english, 2007

25

A stabilized HIV-1 envelope glycoprotein trimer fused to CD40 ligand targets and activates dendritic cells

Mark Melchers, Katie Matthews, Robert P de Vries, Dirk Eggink, Thijs van Montfort, Ilja Bontjer, Carolien van de Sandt, Kathryn David, Ben Berkhout, John P Moore, Rogier W Sanders

Journal:

Year:

2011

Language:

english

File:

PDF, 2.07 MB

english, 2011

26

Latency profiles of full length HIV-1 molecular clone variants with a subtype specific promoter

Renée M van der Sluis, Georgios Pollakis, Marja L van Gerven, Ben Berkhout, Rienk E Jeeninga

Journal:

Year:

2011

Language:

english

File:

PDF, 582 KB

english, 2011

27

Applications of RNA structure analysis to retroviral packaging and anti-retroviral therapeutic discovery

Kevin M Weeks, Ben Berkhout, Julian W Bess, Siddhartha AK Datta, Cristina Gherge, Robert J Gorelick, Stefanie A Knoepfel, Christopher W Leonard, Tania Lombo, Justin T Low, Alan Rein, Olivier ter Brake

Journal:

Year:

2011

Language:

english

File:

PDF, 73 KB

english, 2011

28

Modest deviations from optimal adherence to antiretroviral therapy promote residual HIV-1 replication in the absence of virological rebound in plasma

Alexander O Pasternak, Marijun de Bruin, Suzanne Jurriaans, Margreet Bakker, Ben Berkhout, Jan M Prins, Vladimir V Lukashov

Journal:

Year:

2011

Language:

english

File:

PDF, 87 KB

english, 2011

29

Deep sequencing of small TAR-derived RNAs in HIV-1 producing cells

Alex Harwig, Ben Berkhout, Atze T Das

Journal:

Year:

2011

Language:

english

File:

PDF, 84 KB

english, 2011

30

Occult replication of a conditionally-live attenuated SIV profoundly upregulates T effector memory cell frequency

Maria Manoussaka, Richard Stebbings, Neil Berry, Atze Das, Ben Berkhout, Neil Almond, Martin Cranage

Journal:

Year:

2011

Language:

english

File:

PDF, 71 KB

english, 2011

31

RNAi strategies to silence HIV-1

Julia Eekels, Veronica lannuci, Rienk E Jeeninga, Bruno Verhasselt, Ben Berkhout

Journal:

Year:

2011

Language:

english

File:

PDF, 71 KB

english, 2011

32

A conditionally replicating SIV variant that can be used to study the mechanism of protection conferred by live attenuated SIV vaccines

Atze T Das, Neil Berry, Bep Klaver, Mark Page, Richard Stebbings, Debbie Ferguson, Martin P Cranage, Neil Almond, Ben Berkhout

Journal:

Year:

2011

Language:

english

File:

PDF, 82 KB

english, 2011

33

Phylogenetic screen for important RNA structure motifs in the HIV-1 genome

Stefanie A Knoepfel, Ben Berkhout

Journal:

Year:

2011

Language:

english

File:

PDF, 67 KB

english, 2011

34

Use of RNA interference to discover pathways involved in HIV infection and replication: cell lines tell many stories, primary cells might tell the truth

Veronica lannucci, Alessia Landi, Jolien Vermeíre, Adele Mucci, Evelien Naessens, Hanne Vanderstraeten, Pieter Meuwissen, Julia Eekels, Ben Berkhout, Mostafa Bentahir, Bruno Verhasselt

Journal:

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

35

Regulatory role of upstream AUG codons within the SIVmac239 genome

Gisela J van der Velden, Atze T Das, Ben Berkhout

Journal:

Year:

2011

Language:

english

File:

PDF, 71 KB

english, 2011

36

Sequences up- and down-stream of the DIS hairpin are important for HIV-1 replication

Nikki van Bel, Atze T Das, Ben Berkhout

Journal:

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

37

HIV-1 splicing is modulated by RNA structure

Nancy Müller, Alex Harwig, Ben Berkhout, Atze T Das

Journal:

Year:

2011

Language:

english

File:

PDF, 76 KB

english, 2011

38

Differential proviral latency of the HIV-1 subtypes B and AE

Renée M van der Sluis, Ben Berkhout, Rienk E Jeeninga

Journal:

Year:

2011

Language:

english

File:

PDF, 71 KB

english, 2011

39

Preclinical test of a lentivirus-mediated RNAi gene therapy against HIV-AIDS in the humanized mouse model

Mireille Centlivre, Nicolas Legrand, Ying-Poi Liu, Karin J von Eíje, Kees Weijer, Bianca Blom, Hergen Spits, Ben Berkhout

Journal:

Year:

2011

Language:

english

File:

PDF, 83 KB

english, 2011

40

The host environment drives HIV-1 fitness

Tim van Opijnen, Ben Berkhout

Journal:

Reviews in Medical Virology

Year:

2005

Language:

english

File:

PDF, 1.44 MB

english, 2005

41

HIV-1 evolution under pressure of protease inhibitors: Climbing the stairs of viral fitness

Journal:

Journal of Biomedical Science

Year:

1999

Language:

english

File:

PDF, 1.20 MB

english, 1999

42

Inhibition of virus replication by RNA interference

Joost Haasnoot, Daniel Cupac, Ben Berkhout

Journal:

Journal of Biomedical Science

Year:

2003

Language:

english

File:

PDF, 1.25 MB

english, 2003

43

The fidelity of reverse transcription differs in reactions primed with RNA versus DNA primers

Belinda B. Oude Essink, Ben Berkhout

Journal:

Journal of Biomedical Science

Year:

1999

Language:

english

File:

PDF, 2.10 MB

english, 1999

44

Major decline of hepatitis C virus incidence rate over two decades in a cohort of drug users

Charlotte H. S. B. van den Berg, Colette Smit, Margreet Bakker, Ronald B. Geskus, Ben Berkhout, Suzanne Jurriaans, Roel A. Coutinho, Katja C. Wolthers, Maria Prins

Journal:

European Journal of Epidemiology

Year:

2007

Language:

english

File:

PDF, 261 KB

english, 2007

45

Human coronavirus NL63, a new respiratory virus

Lia Van Der Hoek, Krzysztof Pyrc, Ben Berkhout

Journal:

FEMS Microbiology Reviews

Year:

2006

Language:

english

File:

PDF, 326 KB

english, 2006

46

Toward a Durable Anti-HIV Gene Therapy Based on RNA Interference

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 148 KB

english, 2009

47

The NS3 protein of rice hoja blanca virus complements the RNAi suppressor function of HIV-1 Tat

Schnettler, Esther, de Vries, Walter, Hemmes, Hans, Haasnoot, Joost, Kormelink, Richard, Goldbach, Rob, Berkhout, Ben

Journal:

Year:

2009

Language:

english

File:

PDF, 523 KB

english, 2009

48

RNA interference against viruses: strike and counterstrike

Haasnoot, Joost, Westerhout, Ellen M, Berkhout, Ben

Journal:

Nature Biotechnology

Year:

2007

Language:

english

File:

PDF, 1.06 MB

english, 2007

49

A Conserved Hairpin Structure Predicted for the Poly(A) Signal of Human and Simian Immunodeficiency Viruses

Ben Berkhout, Bep Klaver, Atze T. Das

Journal:

Year:

1995

File:

PDF, 288 KB

1995

50

Paracrine Activation of the HIV-1 LTR Promoter by the Viral Tat Protein Is Mechanistically Similar toTrans-Activation within a Cell

Koen Verhoef, André Klein, Ben Berkhout

Journal:

Year:

1996

Language:

english

File:

PDF, 449 KB

english, 1996

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